PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00015.1_g00030.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GeBP
Protein Properties Length: 399aa    MW: 44147.1 Da    PI: 4.5605
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00015.1_g00030.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573109.81.8e-34111212197
                   DUF573   1 klfqrlwseeDeivlLqGlidfkaktgk.....spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfs 81 
                              klfqrlw++eDei lLqG++++++++g      + ++d++afy+++k++++++++k+qlveK+rrLKkK+++ ++k+ sgk+++f+
  Sme2.5_00015.1_g00030.1 111 KLFQRLWTDEDEIELLQGFLEYTTQRGGinsssHHHHDTSAFYDQIKNKLQLDFNKNQLVEKLRRLKKKYRTVMSKMGSGKDFVFK 196
                              579***********************98776433445************************************************* PP

                   DUF573  82 kehdqkifelskkiWg 97 
                              ++hdq +f++s+k W 
  Sme2.5_00015.1_g00030.1 197 SPHDQATFQISSKSWS 212
                              *************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045045.3E-32113212IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MASVEDQHAV VYNDDDLDDD EDDEAQNEVL VDEDDDVDVD DDEVDSTSSP PAPVPNHSGA  60
GEVTIAVAGV PASDPLCPEP KRQRINEFDV TPSAIVVAEE KKPLPLDDSR KLFQRLWTDE  120
DEIELLQGFL EYTTQRGGIN SSSHHHHDTS AFYDQIKNKL QLDFNKNQLV EKLRRLKKKY  180
RTVMSKMGSG KDFVFKSPHD QATFQISSKS WSNAGPIVVR SSSAAAPPPL AEDGGFDDED  240
SHLHLNNTNF VEHIPNFNPD GIDVKTSKSR KRPRGGAVNQ QYYQPPSCGG PNVILPPTPV  300
APQATASIPS LIEETVKSCL SPIFKELLTN LNGSRCLGLG MALGPTPLGF GSSAMSSDMK  360
VDEKWRKQQI LELEVYSKRL ELVQDQIKAQ LEELRSMTR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015067113.10.0PREDICTED: mediator-associated protein 1-like
TrEMBLA0A0V0I5T20.0A0A0V0I5T2_SOLCH; Putative mediator-associated protein 1-like
STRINGSolyc02g083750.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40522445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.14e-80DNA-binding storekeeper protein-related transcriptional regulator